Package: qtl2pattern 1.2.2

Brian S Yandell

qtl2pattern: Pattern Support for 'qtl2' Package

Routines in 'qtl2' to study allele patterns in quantitative trait loci (QTL) mapping over a chromosome. Useful in crosses with more than two alleles to identify how sets of alleles, genetically different strands at the same locus, have different response levels. Plots show profiles over a chromosome. Can handle multiple traits together. See <https://github.com/byandell/qtl2pattern>.

Authors:Brian S Yandell [aut, cre]

qtl2pattern_1.2.2.tar.gz
qtl2pattern_1.2.2.zip(r-4.5)qtl2pattern_1.2.2.zip(r-4.4)qtl2pattern_1.2.2.zip(r-4.3)
qtl2pattern_1.2.2.tgz(r-4.4-any)qtl2pattern_1.2.2.tgz(r-4.3-any)
qtl2pattern_1.2.2.tar.gz(r-4.5-noble)qtl2pattern_1.2.2.tar.gz(r-4.4-noble)
qtl2pattern_1.2.2.tgz(r-4.4-emscripten)qtl2pattern_1.2.2.tgz(r-4.3-emscripten)
qtl2pattern.pdf |qtl2pattern.html✨
qtl2pattern/json (API)

Peer review:

Bug tracker:https://github.com/byandell/qtl2pattern/issues

On CRAN:

22 exports 1 stars 0.93 score 55 dependencies 2 scripts 245 downloads

Last updated 11 months agofrom:44e129ddc5. Checks:OK: 7. Indexed: yes.

Exports:allele1autoplot.feature_tblautoplot.gene_exonautoplot.merge_featureautoplot.scan1patterncreate_probs_query_funcgene_exongenoprob_to_patternprobggplot_allele1ggplot_feature_tblggplot_gene_exonggplot_merge_featureggplot_scan1patternmerge_featurepattern_labelpattern_sdpread_fastscan1patternsdp_to_logicalsdp_to_patternsnpprob_collapsetop_snps_pattern

Dependencies:assertthatbitbit64blobcachemclicolorspacecpp11data.tableDBIdplyrfansifarverfastmapfstfstcoregenericsggplot2gluegtableisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmunsellnlmepillarpkgconfigplogrpurrrqtl2qtl2fstR6RColorBrewerRcppRcppEigenrlangRSQLitescalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithryaml